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1.        ZHENG CHUN-HOU, CHEN YAN, LI XIU-XIA, LI YI-XUE, ZHU YUN-PING. TUMOR CLASSIFICATION BASED ON INDEPENDENT COMPONENT ANALYSIS. International Journal of Pattern Recognition and Artificial Intelligence, 2006, 20(2): 297-310

 

2.        ZHAO XING-MING, DU JI-XIANG, WANG HONG-QIANG, ZHU YUNPING, LI YIXUE. A NEW TECHNIQUE FOR SELECTING FEATURES FROM PROTEIN SEQUENCES. International Journal of Pattern Recognition and Artificial Intelligence, 2006, 20(2): 271-283

 

3.        Huang X, Huang DS, Zhang GZ, Zhu YP, Li YX. Prediction of protein secondary structure using improved two-level neural network architecture. Protein Pept Lett., 2005, 12(8): 805-811

 

4.        Zhang Guang-Zheng, Huang D.S, Zhu Y.P, Li YX. Improving protein secondary structure prediction by using the residue conformational classes.. Pattern Recognition Letters, 2005, 26(): 2346-2352

 

5.        Wu Xiao-Run, Zhu Yunping, Li Yixue. Analyzing Protein Interaction Networks via Random Graph Model. International Journal of Information Technology, 2005, 11(8): 125-132

 

6.         Li Jing-Jing, Huang De-Shuang, Tat-Ming Lok, Michael R. Lyu, Li Yi-Xue and Zhu Yun-Ping. Network Analysis of the Protein Chain Tertiary Structures of Heterocomplexes. Protein & Peptide Letters, 2006, 13(4): 391-396

 

7.        Wan Jia, Sun Wei, Li Xiaohai, Ying Wantao, Dai Jingquan, Kuai Xuezhang, Wei Handong, Gao Xue, Zhu Yunping, Jiang Ying, Qian Xiaohong & He Fuchu. Inflammation inhibitors were remarkably up-regulated in plasma of severe acute respiratory syndrome patients at progress phase. Proteomics, 6, 2886-94, 2006

 

8.        Zheng Junjie, Gao Xue, Laura Beretta, He Fuchu. The Human Liver Proteome Project (HLPP) Workshop during the 4th HUPO World Congress. Proteomics, 6, 1716-1718, 2006

 

9.        Chen Xiaoping, Wang Haijian, Xie Weimin, Liang Renxiang, Wei Zhongliang, Zhi Lianteng, Zhang Xiumei, Hao Bingtao, Zhong Shafei, Zhou Gangqiao, Zhang Lingqiang, Gao Xue, Zhu Yunping, He Fuchu. Association of CYP1A2 genetic polymorphisms with hepatocellular carcinoma susceptibility: a case-control study in a high-risk region of China. Phamacogenetics & Genomics 16: 219-227, 2006

 

10.    He Fuchu. Proteomics in China. Proteomics, 6, 397-403, 2006

 

11.    Wu Songfeng, Wan Ping, Li Jianqi, Li Dong, Zhu Yunping, He Fuchu. Multi-modality of pI distribution in whole proteome. Proteomics, 6, 449-455, 2006

 

12.    Li Dong, Li Jianqi, Ouyang Shuguang, Wang Jian, Wu Songfeng, Wan Ping, Zhu Yunping, Xu Xiaojie, He Fuchu. Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: Large-scale organization and robustness. Proteomics, 6, 456-461, 2006

 

13.    Ning Yunshan, Wang Yundan, Li Yan, Hong Yanhua, Peng Dandan, Liu Yichu, Wang Junxiang, Hao Wenbo, Tian Xuemei, Wu Fenfang, Dong Wenqi, Wang Lihong, Wu Qiong, Liu Xiaolan, Gao Jianen, He Fuchu, Qian Xiaohong, Sun Qi-Hong and Li Ming. An alternative strategy for high throughput generation and characterization of monoclonal antibodies against human plasma proteins using fractionated native proteins as immunogens. Proteomics, 6, 438–448, 2006

 

14.    Gao Jianen, Gao Yuan, Ju Yanfang, Yang Jinju, Wu Qiong, Zhang Jinchao, Du Xuemei, Wang Zhaoqing, Song Yingbo, Li Hui, Luo Xiaotong, Ren Feiyao, Li Jian, Chen Yong, Wang Lihong, Xu Han, Liu Xiaolan, Wang Jinlan, Zhang Yangjun, Cai Yun, Cui Yufang, Qian Xiaohong, He Fuchu, Li Ming, and Sun Qi-Hong. Proteomics-based generation and characterization of monoclonal antibodies against human liver mitochondrial proteins. Proteomics, 6, 427–437, 2006

 

15.    Li Dong, Li Jianqi, Ouyang Shuguang, Wu Songfeng, Wang Jian, Xu Xiaojie, Zhu Yunping, He Fuchu. An integrated strategy for functional analysis in large-scale proteomic research by Gene Ontology. Progress in Biochem. & Biophys. 32(11): 1026-9, 2005

 

16.    He Fuchu. Human Liver Proteome Project: Plan, Progress, and Perspectives. Mol Cell Proteomics 4: 1841-1848; 2005

 

17.    Zhang H, Zhou G, Zhi L, Yang H, Zhai Y, Dong X, Zhang X, Gao X, Zhu Y, He F. Association between Mannose-Binding Lectin Gene Polymorphisms and Susceptibility to Severe Acute Respiratory Syndrome Coronavirus Infection. J Infect Dis. 192(8):1355-61; 2005

 

18.    Chen Xiaoping, Wang Liqing, Zhi Liangtan, Zhou Gangqiao, Wang Haijian, Zhang Xiumei, Hao Bingtao, Zhu Yunping, Cheng Zeneng, He Fuchu. The G-113A polymorphism in CYP1A2 affects the caffeine metabolic ratio in a Chinese population. Clin Pharmacol Ther 78: 249-59, 2005

 

19.    Li Xiaohai, Gong Yan, Wang Ying, Wu Songfeng, Cai Yun, He Ping, Lu Zhuang, Ying Wantao, Zhang Yangjun, Jiao Liyan, He Hongzhi, Zhang Zisen, He Fuchu, Zhao Xiaohang, Qian Xiaohong. Comparison of alternative analytical techniques for the characteriztion of the human serum proteome in HUPO Plasma Proteome Project. Proteomics 5(13): 3423-41, 2005

 

20.    Li Yingxian, liu Wanying, Xing Guichun, Zhu Yunping, He Fuchu. Direct association of hepatopoietin with thioredoxin constitutes a redox signal transduction in activation of AP-1/NF-kappaB. Cellular Signalling 17(8): 985-996, 2005

 

21.    Yang Hui-Jun, Jiang Hu-Jun, Fang Wei-Yi, Xu Yang-Yan, Li Kai, Zhang Jia, Liao Duan-Fang & He Fu-Chu. High fidelity PCR with an off/on switch mediated by proofreading polymerase combining with phosphorothioate-modified primer. Biochem & Biophys Res Comm 328: 265-72, 2005

 

22.    Zhang Lingqiang, Xing Guichun, Tie Yi, Tang Ying, Tian Chunyan, Li Li, Sun Libo, Wei Handong, Zhu Yunping, He Fuchu. Role for the plecstrin homology domain-containing protein CKIP-1 in AP-1 regulation and apoptosis. EMBO J 24:766-78, 2005

 

23.    Zhang Xuemei, Miao Xiaoping, Liang Gang, Hao Bingtao, Wang Yonggang, Tan Wen, Li Yi, Guo Yongli, He Fuchu, Wei Qingyi, Lin Dongxin. Polymorphisms in DNA base excision repair genes ADPRT and XRCC1 and risk of lung cancer. Cancer Research 65(3): 722-6, 2005

 

24.    He Y, Zhou G, Zhai Y, Dong X, Lv L, He F*, Yao K*. Association of PLUNC gene polymorphisms with susceptibility to nasopharyngeal carcinoma in a Chinese population. J. Med. Genetics 42: 172-6, 2005

 

25.    Wang Q, Fan G, Chen J, Chen H, He F. A putative NES mediates cytoplasmic localization of apoptin in normal cells. Acta Biochimica et Biophysica Sinica 36(12): 817-23, 2004

 

26.    Wang H., Hao B., Zhou K., Chen X., Wu S., Zhou G., Zhu Y., He F. Linkage disequilibrium and haplotype architecture for two ABC transporter genes (ABCC1 and ABCG2) in Chinese population: Implications for pharmacogenomic association studies. Annals Human Genetics 68:563-73, 2004

 

27.    Wang Z, Wei H, Yu Y, Sun J, Yang Y, Xing G, Wu S, Zhou Y, Zhu Y, Zhang C, Zhou T, Zhao X, Sun Q, He F. Characterization of ceap-11 and ceap-16, two novel splicing–variant–proteins, associated with centrosome, microtubule aggregation and cell proliferation. J. Mol. Biol. 2004 Oct 8; 343(1): 71-82.

 

28.    Li Y, Lu C, Xing G, Zhu Y, He F, Macrophage migration inhibitory factor directly interacts with hepatopoietin and regulates the proliferation of hepatoma cell. Exp Cell Res. 2004 Nov 1;300(2):379-87.

 

29.    Zhang Chenggang, Meng Fanwei, Wang Chunli, Gao Haiyun, Fan Ming, liu Shaojun, Zhou Renping, He Fuchu. Identification of a novel splicing form of human netrin-4 and analyzing the expression patterns in adult rat brain. Molecular Brain Research 120:68-80, 2004

 

30.    Wang Yan, Lu Chengrong, Wei Handong, Wang Na, Chen Xiaoxiao, Zhang Lingqiang, Zhai Yun, Zhu Yunping, Lu Yinglin, He Fuchu. Hepatopoietin Interacts Directly with COP9 Signalosome and Regulates AP-1 Activity. FEBS Letters 572: 85-91, 2004

 

31.    Deng Guohong, Zhou Gangqiao, Zhai Yun, Li Shuqing, Li Xuhong, Li Ya, Zhang Ruifang, Yao Zhijian, Shen Yan, Qiang Boqing, Wang Yuming and He Fuchu. Association of estrogen receptor alpha polymorphisms with susceptibility to chronic hepatitis B virus infection. Hepatology 40:318-26, 2004

 

32.    Hao Bingtao, Wang Haijian, Zhou Kaixin, Li Yi, Chen Xiaoping, Zhou Gangqiao, Zhu Yunping, Miao Xiaoping, Wei Qingyi, Shen Yan, Qiang Boqing, Lin Dongxin and He Fuchu. Variants in Base Excision Repair Genes Associated with Esophageal Squamous Cell Carcinoma in a Chinese Population. Cancer Res 64:4378-84, 2004

 

33.    Liu Wanli, Tang Li, Zhang Ge, Wei Handong, Cui Yufang, Guo Lihai, Gou Zikuan, Chen Xiaoxiao, Jiang Daifeng, Zhu Yunping, Kang Gefei and He Fuchu. Characterization of a Novel C-type Lectin-like geneLESCtin: Demonstration of Carbohydrate Binding and Expression in Sinusoidal Endothelial Cells of Liver and Lymph Node. J Biol Chem. 279(18):18748-58; 2004 Apr 30.

 

34.    Chen Xiaoxiao, Li Yong, Qiu Zongyin, He Fuchu. Identification of hepatopoietin interacting proteins in human testis by yeast two-hybrid system. Progress in Biochem & Biophys 31(4):334-8, 2004

 

35.    Zhou Gangqiao, Zhai Yun, Dong Xiaojia, Zhang Xiumei, He Fengying, Wei Handong, Chen Xiaoping, Yao Zhijian, Shen Yan, Qiang Boqing, and He Fuchu. Molecular variation at the human TNFRSF5 locus in Chinese population. Human Mutation. 23:99-100, 2004.

 

36.    Zhou Gangqiao, Zhai Yun, Dong Xiaojia, Zhang Xiumei, He Fengying, Zhou Kaixin, Zhu Yunping, Wei Handong, Yao Zhijian, Zhong Shaofei, Shen Yan, Qiang Boqing, and He Fuchu. Haplotype structure and evidence for positive selection at the human IL13 locus. Molecular Biology and Evolution. 21:1-7, 2004.

 

37.    Ying Wantao, Hao Yunwei, Zhang Yangjun, Peng Wenming, Qin Ede, Cai Yun, Wei Kaihua, Wang Jie, Chang Guohui, Sun Wei, Dai Shujia, Li XiaohaiZhu Yunping, Li Jianqi, Wu Songfeng, Guo Lihai, Dai Jingquan, Wang Jinglan, Wan Ping, Chen Tinggui, Du Chunjuan, Li Dong, Wan Jia, Kuai Xuezhang, Li Weihua, Shi Rong, Wei Handong, Cao Cheng, Yu Man, Liu Hong, Dong Fangting, Wang Donggen, Zhang Xuemin, Qian Xiaohong, Zhu Qingyu, He Fuchu. Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus. Proteomics 4:492-504, 2004

 

38.    Chen X, Li Y, Wei K, Li L, Liu W, Zhu Y, Qiu Z, He F. The potentiation role of hepatopoietin on activator protein-1 is dependent on its sulfhydryl oxidase activity. J Biol Chem. 2003 Dec 5;278(49):49022-30.

 

39.    Wang Haijian, Tan Wen, Hao Bingtao, Miao Xiaoping, Zhou Gangqiao, He Fuchu *, Dongxin Lin*. Substantial reduction in risk of lung adenocarcinoma associated with genetic polymorphism in CYP2A13, the most active cytochrome P450 for the metabolic activation of tobacco-specific carcinogen NNK. Cancer Research 63:8057-61, 2003

 

40.    Ding Keyue, Zhou Kaixin, He Fuchu *, Yan Shen*. LDA-a java-based linkage disequilibrium analyzer. Bioinformatics 19(16):2147-8, 2003

 

41.    Chen Guolin, Wang Haijian, Wang Wei, Xu Zhenhua, Zhou Gan, He Fuchu *, Zhou Honghao *. Histamine N-methyltransferase gene polymorphisms in Chinese and their relationship with enzyme activity in erythrocytes. Pharmacogenetics 13:389-97, 2003

 

42.    Jiang Daifeng, Ying Wantao, Lu Yinglin, Wan Jinghong, Zhai Yun, Liu Wanli, Zhu Yunping, Qiu Zongyin, Qian Xiaohong, He Fuchu. Identification of metastasis-associated proteins by proteomic analysis and functional exploration of interleukin-18 in metastasis. Proteomics 3:724-737, 2003

 

43.    Ma Xiaoyun & He Fuchu. Advances in the study of SR protein family. Genomics, Proteomics & Bioinformatics 1(1):2-8, 2003

 

44.    Yu Jun, Wang Jian, He Fuchu & Yang Huangming. “Three kingdoms” to romance. Genomics, Proteomics & Bioinformatics 1(1):1, 2003

 

45.    Zhao Yanlin, Tang Fei, Cheng Jingwei, Li Li, Xing Guichun, Zhu Yunping, Zhang Lingqiang, Wei Handong, He Fuchu. An initiator and its flanking elements function as a core promoter driving transcription of the Hepatopoietin gene. FEBS LETTERS 540:58-64,2003

 

46.    Yang Heyi, Wang Haijian, Wang Jie, Cai Yun, Zhou Gangqiao, He Fuchu, Qian Xiaohong. Multiplex single-nucleotide polymorphism genotype by matrix-assited laser desorption/ionization time-of-flight mass spectrometry. Analytic Biochem. 314:54-62, 2003

 

47.    Ouyang S, He F. Phylogeny of a Growth Hormone-Like Cytokine Superfamily Based upon 3D Structure. J Mol Evol 2003 Feb;56(2):131-6

 

48.    Lu J, Xu WX, Zhan YQ, Cui XL, Cai WM, He FC, Yang XM. Identification and characterization of a novel isoform of hepatopoietin. World J Gastroenterol 8(2): 353-6, 2002

 

49.    Qu, X., Wei, H., Zhai, Y., Que, H., Chen, Q., Tang, F., Wu, Y., Xing, G., Zhu, Y., Liu, S., Fan, M., He, F. Identification, Characterization, and Functional Study of the Two Novel Human Members of the Semaphorin Gene Family. J. Biol. Chem. 2002 277: p. 35574-35585

 

50.    Li, Y., Wei, K., Lu, C., Li, Y., Li, M., Xing, G., Wei, H., Wang, Q., Chen, J., Wu, C., Chen, H., Yang, S., He, F. Identification of hepatopoietin dimerization, its interacting regions and alternative splicing of its transcription. Eur J Biochem 2002 269: 3888-3893

 

51.    Qu Xianghu, Zhai Yun, Wei Handong, Zhang Chenggang, xing Guichun, Yu Yongtao, He Fuchu. Characterization and expression of three novel differentiation-related genes belong to the human NDRG gene family. Mol. Cell. Biochem. 229: 35-44, 2002

 

52.    Zhang C, Wang C, Deng M, Li L, Wang H, Fan M, Xu W, Meng F, Qian L, He F. Full-Length cDNA Cloning of Human Neuroglobin and Tissue Expression of Rat Neuroglobin. Biochem Biophys Res Commun 290(5):1411-1419, 2002

 

53.    Lu Chengrong, Li Yong, Zhao Yanlin, Xing Guichun, Tang Fei, Wang Qingming, Sun Yuhui, Wei Handong, Yang Xiaoming, Wu Chutse, Chen Jianguo, Guan Kun-liang, Zhang Chenggang, Chen Huipeng, and He Fuchu. Intracrine hepatopoietin potentiates AP-1 activity through JAB1 independent of MAPK pathway FASEB J. published Nov 14, 2001, 10.1096/fj.01-0506fje (16: 90-2, 2002)

 

54.    Li Yong, Xing Guichun, Wang Qingming, Li Ming, Wei Handong, Fan Guocai, Chen Jizhong, Yang Xiaoming, Wu Chutse, Chen Huipeng, He Fuchu. Hepatopoietin acts as an autocrine growth factor in hepatoma cells. DNA & Cell Biol. 20(12): 791-795, 2001

 

55.    Jiang Yan, Xu Wangxiang, Lu Jun, He Fuchu & Yang Xiaoming. Invasiveness of hepatocellular carcinoma cell lines: Contribution of hepatocyte growth factor, c-Met, and transcription factor Ets-1. Biochem. & Biophys. Res. Communication 286:1123-30, 2001

 

56.    Wan Jinghong, Wang Jinglan, Chen Haiping, Yu Yongtao, Xing Guichun, Qiu Zongyin, Qian Xiaohong, He Fuchu. Proteomic analysis of apoptosis initiation induced by all-trans retinoic acid in human acute promyelocytic leukemia cells. Electrophoresis 213026-372001

 

57.    Guo Xiaoxia, Ying Wantao, Wan Jinghong, Hu Zhiyuan, Qian Xiaohong, Zhang Hongwei, He Fuchu. Proteomic Characterization of Early Stage Differentiation of Mouse Embryonic stem Cells into Neural Cells Induced by Retinoic Acid in vitro. Electrophoresis 213067-752001

 

58.    Yu Yongtao, Zhang Chenggang, Zhou Gangqiao, Wu Songfeng, Qu Xianghu,  Wei Handong, Xing Guichun, Dong Chunna, Zhai Yun, Wan Jinghong,  Ouyang Shuguang, Li Li, Zhang Shaowen, Zhou Kaixin, Zhang Yinan,  Wu Chutse, and He Fuchu. Gene Expression Profiling in Human Fetal Liver and Identification of Tissue- and Developmental-Stage-Specific Genes through Compiled Expression Profiles and Efficient Cloning of Full-Length cDNAs. Genome Res.11(8):1392-1403, 2001

 

59.    Zhu Fuxiang, Jia Shidong, Xing Guichun, Gao Linlu, Zhang Lingqiang, He Fuchu. cDNA transfection of amino-terminal fragment of urokinase efficiently inhibits cancer cell invasion and metastasis. DNA & Cell Biology 20(5):297-305, 2001

 

60.    Qu Xianghu, Zhang Chenggang, Zhai Yun, Xing Guichun, Wei Handong, Yu Yongtao, Wu Songfeng, He Fuchu. Characterization and Tissue Expression of a Novel Human Orthologue of Mouse npdc1. Gene 2641),37-442001

 

61.    Liu Xiaoqin, Zhang Chenggang, Zhang Shaowen, Xing Guichun, Chen Qingtang, and He Fuchu. Characterization of ARF GAP family and its first member derived from human being. FEBS LETT 490:79-832001

 

62.    Sun Zhirong, Ji Xinglai, Hu Shengmin, Wang Yu, He Fuchu. A new

 

63.    Jia S, Zhu F, Li H, He F, Xiu R. Anticancer treatment of endostatin gene therapy by targeting tumor neovasculature in C57/BL mice. Clin Hemorheol Microcirc 23(2-4):251-7; 2000

 

64.    Li Yong, Li Ming, Xing Guichun, Hu Zhiyuan, Wang Qingming, Dong Chunna, Wei Handong, Fan Guocai, Chen Jizhong, Yang Xiaoming, Zhao Shifu, Chen Huipeng, Guan Kunliang, Wu Chutse, Zhang Chenggang, He Fuchu. Stimulation of the mitogen-activated  protein kinase cascade and tyrosine phosphorylation of the epidermal growth factor receptor by hepatopoietin. J Biol Chem   275(48): 37443-7, 2000

 

65.    Zhang Chenggang, Yu Yongtao, Zhang Shaowen, Liu Mengmin, Xing Guichun, Wei Handong, Bi Jianjin, Liu Xiaoqin, Zhou Gangqiao, Dong Chunna, Hu Zhiyuan, Zhang Yong, Luo Ling, Wu Chutse, Zhao Shifu, He Fuchu. Characterization, Chromosomal Assignment, and Tissue Expression of a Novel Human Gene Belong to ARF GAP Family. Genomics 63(3):400-8, 2000

 

66.    Liu Tao, Wu Jiajin, He Fuchu. Evolution of cis-acting elements in 5 flanking regions of vertebrate actin genes. J Mol. Evol. 50(1):22-30, 2000

 

67.    Xu W, Wang S, Wang G, Wei H, He F, Yang X. Identification and characterization of differentially expressed genes in the early response phase during liver regeneration. Biochem Biophys Res Commun 278(2):318-25; 2000

 

68.    Wang Ge, Yang Xiaoming, Zhang Yong, Wang Qingming, Chen Huipen, Wei Handong, Xing Guichun, Xie Ling, Hu Zhiyuan, Zhang Chenggang, Fang Dianchun, Wu Chutse and He Fuchu. Identification and characterization of receptor for the mammalian hepatopoietin that is homologous to yeast ERV1. J Biol Chem 274:11469-11472,1999

 

69.    Zhang Shao Wen, Zhang Chenggang, Yu Yong Tao, Mao Bing Zhi, He Fu Chu. DFT study on structures and vibrational frequencies of (CS2)2-. Chemical Physics Letters 304:265-270,1999

 

70.    Zhang Shao-wen, He Fu-chu. Thermolysis mechanism of N-acetylpropanamide. Int J Quantum Chem  74:337-3421999

 

71.    Yang Xiaoming, Xie Ling, Xing Guichun, Wu Zuze & He Fuchu. Partial isolation and identification of hepatic stimulator substance mRNA extracted from human fetal liver. World J Gastroenterol 4(2):100-2, 1998

 

72.    Wang Lisheng, Wu Chutse, Pei Xuetao, Xu LiCao Surong, He Fuchu. Purging effect of dibutgl phthalate on leukemic cells associated with apoptosis. Leuk Res 20:989-92,1996

 

73.    He Fuchu, Wu Chutse, Tu Qiang, Xing Guichun. Human hepatic stimulatory substance: a product of gene expression in fetal liver. Hepatology 17(2), 225-229, 1993

 

74.    He Fuchu & Wu Chutse. Molecular evolution of cytokines and their receptors. Experimental Hematology 21(4), 521-524, 1993


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